ConCisE Scanner


Conserved Cis-Element Scanner: Genome-wide ortholog conserved Cis-element module search

Specify search Terms and region

Form your own query
Search Tips
Region
a) Enter basepairs ( to modify the default 10 KB sequence region )
b) Choose region : Upstream Downstream Upstream & Downstream
c) With respect to : First Exon Last Exon Gene

Query on individual matrices


Select binding sites for search against genes :

V$AARF - AARE binding factors V$AHRR - AHR-arnt heterodimers and AHR-related factors
V$AIRE - Autoimmune regulatory element binding factor V$AP1F - AP1, Activating protein 1
V$AP1R - MAF and AP1 related factors V$AP2F - Activator protein 2
V$AP4R - AP4 and related proteins V$AREB - Atp1a1 regulatory element binding
V$ARID - AT rich interactive domain factor V$ARP1 - Apolipoprotein aI and cIII gene repressor protein
V$ATBF - AT-binding transcription factor V$BARB - Barbiturate-inducible element box from pro+eukaryotic genes
V$BCL6 - POZ domain zinc finger expressed in B-Cells V$BEL1 - Bel-1 similar region
V$BNCF - Basonuclein rDNA transcription factor (PolI) V$BRAC - Brachyury gene, mesoderm developmental factor
V$BRNF - Brn POU domain factors V$BTBF - BTB/POZ (broad complex, TramTrack, Bric à brac/pox viruses and zinc fingers) transcription factor
V$CABL - C-abl DNA binding sites V$CART - Cart-1 (cartilage homeoprotein 1)
V$CDEF - Cell cycle regulators: Cell cycle dependent element V$CDXF - Vertebrate caudal related homeodomain protein
V$CEBP - Ccaat/Enhancer Binding Protein V$CHOP - CHOP binding protein
V$CHRE - Carbohydrate response elements, consist of two E box motifs separated by 5 bp V$CHRF - Cell cycle regulators: Cell cycle homology element
V$CIZF - CAS interating zinc finger protein V$CLOX - CLOX and CLOX homology (CDP) factors
V$CMYB - C-myb, cellular transcriptional activator V$COMP - Factors which cooperate with myogenic proteins
V$COUP - Repr. of RXR-mediated activ. & retinoic acid responses V$CP2F - CP2-erythrocyte Factor related to drosophila Elf1
V$CREB - Camp-Responsive Element Binding proteins V$CSEN - Calsenilin, presenilin binding protein, EF hand transcription factor
V$DEAF - Homolog to deformed epidermal autoregulatory factor-1 from D. melanogaster V$DICE - Downstream Immunoglobulin Control Element, critical for B cell activity and specificity
V$DMTF - Cyclin D binding myb-like transcription factor V$E2FF - E2F-myc activator/cell cycle regulator
V$E2TF - papillioma virus E2 Transcriptional activator V$E4FF - Ubiquitous GLI - Krueppel like zinc finger involved in cell cycle regulation
V$EBOR - E-box related factors V$EBOX - E-box binding factors
V$ECAT - Enhancer CCAAT binding factors V$EGRF - EGR/nerve growth factor induced protein C & related factors
V$EKLF - Basic and erythroid Krueppel like factors V$EREF - Estrogen Response Elements
V$ETSF - Human and murine ETS1 factors V$EVI1 - EVI1-myleoid transforming protein
V$FAST - FAST-1 SMAD interacting proteins V$FKHD - Fork Head Domain factors
V$GABF - GA-boxes V$GATA - GATA binding factors
V$GCMF - Chorion-specific transcription factors with a GCM DNA binding domain V$GFI1 - Growth Factor Independence-transcriptional repressor
V$GKLF - Gut-enriched Krueppel like binding factor V$GLIF - GLI zinc finger family
V$GREF - Glucocorticoid responsive and related elements V$GRHL - Grainyhead
V$GZF1 - GDNF-inducible zinc finger gene 1 V$HAML - Human acute myelogenous leukemia factors
V$HAND - bHLH transcription factor dimer of HAND2 and E12 V$HEAT - Heat shock factors
V$HEN1 - E-box binding factor without transcript. activation V$HESF - Vertebrate homologues of enhancer of split complex
V$HICF - Krueppel-like C2H2 zinc finger factors hypermethylated in cancer V$HIFF - Hypoxia inducible factor, bHLH / PAS protein family
V$HMTB - Human muscle-specific Mt binding site V$HNF1 - Hepatic Nuclear Factor 1
V$HNF4 - Hepatic Nuclear Factor 4 V$HNF6 - Onecut Homeodomain factor HNF6
V$HOMF - Homeodomain transcription factors V$HOXC - HOX - PBX complexes
V$HOXF - Factors with moderate activity to homeo domain consensus sequence V$HOXH - HOX - MEIS1 heterodimers
V$IKRS - Ikaros zinc finger family V$INSM - Insulinoma associated factors
V$IRFF - Interferon regulatory factors V$LEFF - LEF1/TCF
V$LHXF - Lim homeodomain factors V$LTUP - Lentiviral Tata UPstream element
V$MAZF - Myc associated zinc fingers V$MEF2 - MEF2-myocyte-specific enhancer-binding factor
V$MEF3 - MEF3 BINDING SITES V$MINI - Muscle INItiator
V$MITF - Microphthalmia transcription factor V$MOKF - Mouse Krueppel like factor
V$MTF1 - Metal induced transcription factor V$MYOD - MYOblast Determining factor
V$MYOF - MYOgenic Factors V$MYT1 - MYT1 C2HC zinc finger protein
V$MZF1 - Myeloid Zinc Finger 1 factors V$NEUR - NeuroD, Beta2, HLH domain
V$NF1F - Nuclear Factor 1 V$NFAT - Nuclear Factor of Activated T-cells
V$NFKB - Nuclear Factor Kappa B/c-rel V$NKXH - NKX homeodomain factors
V$NOLF - Neuron-specific-olfactory factor V$NR2F - Nuclear receptor subfamily 2 factors
V$NRF1 - Nuclear respiratory factor 1 V$NRLF - Neural retina leucine zipper
V$NRSF - Neuron-Restrictive Silencer Factor V$OAZF - Olfactory associated zinc finger protein
V$OCT1 - Octamer binding protein V$OCTB - OCT6 binding factors_astrocytes + glioblastoma cells
V$OCTP - OCT1 binding factor (POU-specific domain) V$P53F - p53 tumor suppr.-neg. regulat. of the tumor suppr. Rb
V$PARF - PAR/bZIP family V$PAX1 - PAX-1 binding sites
V$PAX2 - PAX-2 binding sites V$PAX3 - PAX-3 binding sites
V$PAX4 - Heterogeneous PAX-4 binding sites V$PAX5 - PAX-5/PAX-9 B-cell-specific activating protein
V$PAX6 - PAX-4/PAX-6 paired domain binding sites V$PAX8 - PAX-2/5/8 binding sites
V$PBXC - PBX1 - MEIS1 complexes V$PCAT - Promoter CCAAT binding factors
V$PDX1 - Pancreatic and intestinal homeodomain transcr. factor V$PERO - PEROxisome proliferator-activated receptor
V$PIT1 - GHF-1 pituitary specific pou domain transcription factor V$PLAG - Pleomorphic adenoma gene
V$PLZF - C2H2 zinc finger protein PLZF V$PPAR - Peroxisome proliferative activated receptor homodimers
V$PRDF - Positive regulatory domain I binding factor V$PTF1 - Pancreas transcription factor 1, heterotrimeric transcription factor
V$PURA - Pur-alpha binds both single-stranded and douple-stranded DNA in a sequence-specific manner V$PXRF - Pregnane X receptor
V$RARF - Nuclear receptor for retinoic acid V$RBIT - Regulator of B-Cell IgH transcription
V$RBPF - RBPJ - kappa V$RCAT - Retroviral CCAAT binding factors
V$REBV - Epstein-Barr virus transcription factor R V$RORA - v-ERB and rar-related Orphan Receptor Alpha
V$RP58 - RP58 (ZFP238) zinc finger protein V$RREB - Ras-responsive element binding protein
V$RU49 - Zinc finger transcription factor RU49, zinc finger proliferation 1 - Zipro1 V$RUSH - RING finger motifs that bind to the uteroglobin promoter. RUSH nucleophosphoproteins contain regions of homology with members of the SWI/SNF superfamily of DNA-dependent helicases/ATPases
V$RXRF - RXR heterodimer binding sites V$SATB - Special AT-rich sequence binding protein
V$SF1F - Vertebrate steroidogenic factor V$SIXF - Sine oculis (SIX) homeodomain factors
V$SMAD - Vertebrate SMAD family of transcription factors V$SNAP - snRNA-activating protein complex
V$SORY - SOx/sRY-sex/testis determinig and related HMG box factors V$SP1F - GC-Box factors SP1/GC
V$SRFF - Serum response element binding factor V$STAF - Selenocysteine tRNA activating factor
V$STAT - Signal transducer and activator of transcription V$TALE - TALE homeodomain class recognizing TG motifs
V$TBPF - Tata-binding protein factor V$TCFF - TCF11 transcription factor
V$TEAF - TEA/ATTS DNA binding domain factors V$TFII - GTF2I repeat domain-containing factors
V$THAP - THAP domain containing protein V$TTFF - Thyroid transcription factor-1
V$VBPF - Chicken vitellogenin gene binding protein factor V$VMYB - AMV-viral myb oncogene
V$WHZF - Winged Helix and ZF5 binding sites V$XBBF - X-box binding factors
V$YY1F - Activator/repressor binding to transcription initiation site V$ZBPF - Zinc binding protein factors
V$ZF35 - Zinc finger protein ZNF35 V$ZF5F - ZF5 POZ domain zinc finger
V$ZFIA - Zinc finger with interaction domain factors V$ZNFP - Zinc finger proteins
I$ADGC - activator of alcohol dehydrogenase gene, ADF-1 protein I$DBRC - Drosophila BRoad-Complex for ecdysone steroid response
I$DCAD - Drosophila homeodomain protein caudal I$DCF1 - Drosophila Chorion Factor 1 /Ultraspiracle
I$DCF2 - Drosophila Chorion Factor 2 I$DCRO - Drosophila CROcodile Head Factors
I$DDVL - Drosophila Dorsal VentraL Factor I$DE74 - Drosophila ecdysone induced protein E74A
I$DELF - Drosophila neuronal cis element binding factor I$DGCM - Drosophila Glia Cell Missing factors
I$DHAR - Drosophila proneural repressor I$DHOM - Drosophila homeoproteins
I$DHSF - Drosophila heat shock factors I$DHUB - Drosophila gap gene hunchback
I$DKNI - Drosophila segmentation gene knirps I$DKRU - Drosophila gap gene Krueppel
I$DPCG - Cis-acting silencer sequences binding Drosophila polycomp group proteins I$DSNA - Drosophila snail protein
I$DSTA - Drosophila STAT I$DSUH - Drosophila supressor of Hairless
I$DSXF - Drosophila sex determinating transcription factor doublesex I$DTCF - Drosophila T-cell factor
I$DTLL - Drosophila segmentation gene tailless I$DTTK - Drosophila tramtrack protein
I$GAGA - GAGA element, binding sites for proteins of the trithorax group (trxG) I$PRDH - Paired homeodomain factors
I$ZEST - Zeste transvection gene product
 v3.1.2
 Copyright © 2002-2006 Cincinnati Children's Hospital Medical Center